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staRgate

A density-based automated gating pipeline for flow cytometry data to characterize the lineage, differentiation, and functional states of T-cells

This is the GitHub repo for the staRgate R package.

Authors

Jasme Lee, Matthew Adamow, Colleen Maher, Xiyu Peng, Phillip Wong, Fiona Ehrich, Michael A. Postow, Margaret K. Callahan, Ronglai Shen, Katherine S. Panageas

Installation

Bioconductor version

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("staRgate")

GitHub version (developmental)

devtools::install_github("leejasme/staRgate")

Tutorial

A full example on how to run the pipeline is on the webpage

Funding Sources

This research was funded by the V foundation, MSK-MIND, NIH R01CA276286, and NIH P30CA008748.

Contact

Jasme Lee ()